BioProject¶
NCBI BioProject: https://www.ncbi.nlm.nih.gov/bioproject
Chado Project: https://laceysanderson.github.io/chado-docs/tables/project.html
The Chado project table will provide many more linkers in Chado 1.4: until that discussion is resolved, this module will not take full advantage of NCBI BioProjects.
XML |
Chado Base Table |
Chado Column |
---|---|---|
ProjectDescr->Name and ProjectDescr->Title |
project |
name |
ProjectDescr->Description |
project |
description |
ProjectID |
dbxref |
project_dbxref |
Notes and details¶
Multiple organisms¶
We do not insert all organisms when importing a project accession.
Sometimes, a project will specify a different species and taxID
in the Organism tag: <Organism species="57918" taxID="101020">
.
In these cases, the actual biomaterial is derived from the taxID
, so thats what this module imports.
Indirect mappings¶
NCBI Taxon (organism) is linked to BioProject (project) indirectly, via BioSamples (biomaterial).