Pubmed¶
NCBI pubmed records are mapped into chado.pub.
NCBI Pubmed: https://www.ncbi.nlm.nih.gov/pubmed
Chado pub table: https://laceysanderson.github.io/chado-docs/tables/pub.html
Note
Developer’s note: publications are imported using the Tripal core tripal_pub_PMID_parse_pubxml() and tripal_pub_add_publications() functions. Any suggestions or modifications should be made at the Tripal core repo instead.
XML |
Chado Base Table |
Chado Column |
|---|---|---|
Journal |
pub |
title |
NA |
pub |
volumetitle |
Volume |
pub |
volume |
NA |
pub |
series_name |
Issue |
pub |
issue |
PubDate |
pub |
pyear |
MedlinePgn |
pub |
pages |
NA |
pub |
miniref |
(Citation built from multiple keys) |
pub |
uniquename |
PublicationType |
pub |
type_id |
NA |
pub |
publisher |
NA |
pub |
pubplace |
AuthorList |
pubauthor |
surname/givennames/suffix |
XML Key |
Property |
|
|---|---|---|
Journal->ISOAbbreviation |
Journal Abbreviation |
|
Elocation |
||
Media Code |
||
Conference Name |
||
Keywords |
||
Series Name |
||
pISSN |
||
Publication Date |
||
Journal Code |
||
Journal Alias |
||
Journal Country |
||
Published Location |
||
Publication Model |
||
Language Abbr |
||
Alias |
||
Publication Dbxref |
||
Copyright |
||
Abstract |
||
Notes |
||
Citation |
||
Language |
||
URL |
||
eISSN |
||
DOI |
||
ISSN |
||
Publication Code |
||
Comments |
||
Publisher |
||
Media Alias |
||
Original Title |